ARCSINE TRANSFORMATION IN R CODE

>library(MASS) >lamb boxcox(Y_~1,lamb,plotit=T) >library(car) >transform_Y|t|) (Intercept) depth depth^ (Dispersion parameter for gaussian family taken to be ) Null deviance: on 663 degrees of freedom Residual deviance: on 661 degrees of freedom AIC: Number of Fisher Scoring iterations: 2ģ0 Call: zeroinfl(formula = mosqct ~ depth + depth^2, data = pointdata, dist = 'poisson', EM = TRUE) Pearson residuals: Min Q Median Q Max -6.765e e e e e+05 Count model coefficients (poisson with log link): Estimate Std.Understanding Data Transformation. The second term involves the sum of the ln of untransformed values The value of lambda which maximizes the log-likelihood function: yields the best transformation to normality within the family of transformations s2T is the variance of the transformed values (based on v degrees of freedom). Box and Cox (1964) developed a procedure for estimating the best transformation to normality within the family of power transformation Often one do not have a-priori reason for selecting a specific transformation.

ARCSINE TRANSFORMATION IN R CODE

When counts include zero values, it is desirable to code all variates by adding 0.5. Transforming the variates to square roots generally makes the variances independents of the means for these type of data. In the Poisson distribution the variance is the same as the mean.

Such distributions are likely to be Poisson distributed rather than normally distributed. It is used most frequently with count data. We can correct this situation by transforming our model into logarithms Wherever the mean is positively correlated with the variance the logarithmic transformation is likely to remedy the situation and make the variance independent of the meanġ5 We would obtain Which is additive and homoscedastic Weight 1 10.0 2 15.0 3 22.5 4 33.8 5 50.6 6 75.9 7 113.9 8 170.9 9 256.3 10 384.4 11 576.7 12 865.0ĩ Example: Species richness in the Galapagos Islandsĭata to be analyzed using analysis of variance must meet to assumptions: The data must be homoscedastic: variances of treatment groups need to be approximately equal The residuals, or deviations from the mean must be normal random variablesġ2 Lets look an example A single variate of the simplest type of ANOVA (completely randomized, single classification) decomposes as follows: In this model the components are additive with the error term εij distributed normallyġ3 However… We might encounter a situation in which the components are multiplicative in effect, where If we fitted a standard ANOVA model, the observed deviations from the group means would lack normality and homoscedasticity The logarithmic function is very useful when two variables are related to each other by multiplicative or exponential functions

They may be necessary so that the analysis is validĥ They are often useful for converting curves into straight lines: The patterns in the transformed data may be easier to understand and communicate than patterns in the raw data. It is a mathematical function that is applied to all the observations of a given variable Y represents the original variable, Y* is the transformed variable, and f is a mathematical function that is applied to the dataģ Most are monotonic: Monotonic functions do not change the rank order of the data, but they do change their relative spacing, and therefore affect the variance and shape of the probability distributionĤ There are two legitimate reasons to transform your data before analysis Gotelli and Allison Chapter 8 Sokal and Rohlf 2000 Chapter 13 Presentation on theme: 'Transforming the data Modified from:'- Presentation transcript:

Arcsine transformation in r